rs213927600 SNP Detail

Summary

• ID
  rs213927600
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91763543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTCTGGG ATGCCCAGGG
  TGGGTGGATC AGAGAGGAGG GTTAGGTACC CAGAACCCTC CAGAGAGCCC AAAGGATCAG
  GTGGCTTTTG AAAGTCCTGC TGAGTGCAGG CCTCCCTGAC ATCGATGCTG AGCTCTGTCC
  AGCCCTTCCA TCTGCTGTGG TGAGCTGGAG GCTGCCCTGA AGGGAGGGAA CCAGCCAGCC
  Y
  AGCCTGTTTC CTGTTCCCCA TGAAACCAGG GACAGGTGAG AGTCCAGCTC CTTAGAGTCC
  AGCCCTAGAT CTGAACAGCT TCTCAGGGGG TGGCACGGGG CTCCTTCCCT GTGGCAGGGT
  CCCCCCATAG CCATCTGACA GGAATGTGGC AGTGAGATGG GCAAGGAGAG TCCTCTGGTA
  GTGTCCCTTG TTGATCCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354821192	MGP_WTSI_2_91773355	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213927600					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354821192	MGP_WTSI_2_91773355	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91763543 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11916	CpG island 11916	1013 bp distal
D2Mit1007	DNA segment, Chr 2, Massachusetts Institute of Technology 1007	1227 bp distal
D2Mit1008	DNA segment, Chr 2, Massachusetts Institute of Technology 1008	1066 bp distal
Dgkz	diacylglycerol kinase zeta	within coordinates
Gm39876	predicted gene, 39876	within coordinates
Gm75422	predicted gene, 75422	within coordinates
Mdk	midkine	1195 bp upstream
Rr560810	regulatory region 560810	928 bp distal
Rr560811	regulatory region 560811	411 bp distal
Rr560812	regulatory region 560812	1706 bp proximal
Tssr25214	transcription start site region 25214	1664 bp upstream
Tssr25215	transcription start site region 25215	1528 bp upstream
Tssr25216	transcription start site region 25216	1512 bp upstream
Tssr25217	transcription start site region 25217	1475 bp upstream
Tssr25218	transcription start site region 25218	1426 bp upstream
Tssr25219	transcription start site region 25219	1405 bp upstream
Tssr25220	transcription start site region 25220	1209 bp upstream
Tssr25221	transcription start site region 25221	1190 bp upstream