rs213931489 SNP Detail

Summary

• ID
  rs213931489
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106479016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAAGGTCC AGACATTCCG
  GAAAGCCTAG TCTACAGGGG ACTCTGCTTT ATCACACAGG GCACCCCAGT TCAACCTGCA
  CACTAGAAGC CAGGTGGGCC CCTGAGGGAG ACAGCATAGA GCAAGAAGAC AGCAGTCTCA
  GAGCAGGGAG CAGGACCGGC TGGACACTGA TCCAGATGAG TGAAGCCCAG GCATACCCAG
  K
  GCAGGCATTC ATTGGTTTTA CCTAGGTATC TCCTGGTCCC TCACAGGGAA CTGCGTCCTG
  TCACAGAGGA GGAAAGCGGA AGTATAAGGG GTAGTGCTTT TTATTAGGGA TGGAGAAACA
  GAAGTAGAAC CTAGCACCTA GGCACCTTAG TTTTTGCTGT TTGGGCCCCT GCTGAGCAGA
  GGAGAGCCAA GATATTCAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321246848	CHEV_4_106294424	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213931489					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106479016 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14527	CpG island 14527	564 bp proximal
Rr596780	regulatory region 596780	123 bp proximal
Tssr38185	transcription start site region 38185	605 bp upstream
Tssr38186	transcription start site region 38186	667 bp upstream
Tssr38187	transcription start site region 38187	709 bp upstream
Ttc22	tetratricopeptide repeat domain 22	630 bp upstream