rs213945766 SNP Detail

Summary

• ID
  rs213945766
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108139421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCCAGAGC TCCCACCTGT
  CCAGCTGGAA GACTCCCAGG CTCTATTTTA AACCATGTAC ATGTGGTTCC GGGTGTACAA
  GCCTTTATGT CCCCCAGCTA ATTCCTGCTG GCCCTGAAGG CCACGCACGG CTCAGGAAGG
  CTCTCTTCAG GCTACCATGC AAGCAAGCAT ATTCTCGTCA TGGGTTCTGA TTCTCATTCA
  M
  TGAACCCAAA ATCAGTTAAG GACAAAGCAA GATGTATTAC ATGGGCCCCC AAGTCCTACC
  CAGAAGTCCC CAGGGAGTAA AGTCAAACAT TTACTAAATG AATGCATCTT GTCAAATCAG
  GTTTTTTAGA ATGATGAGGA CTTGTCCGGT GACAATTTCA ACAGAGGTAC ATATCAACAA
  TGCTTGCACA TTCCCACCCG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378863584	MGP_WTSI_9_108164553	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213945766					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378863584	MGP_WTSI_9_108164553	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108139421 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22331	CpG island 22331	915 bp proximal
Dag1	dystroglycan 1	within coordinates
Gm69433	predicted gene, 69433	1826 bp upstream
Rr401678	regulatory region 401678	1687 bp upstream
Rr686759	regulatory region 686759	461 bp proximal
Rr686760	regulatory region 686760	1053 bp proximal
Rr686761	regulatory region 686761	1504 bp proximal
Rr686762	regulatory region 686762	1837 bp proximal
Tssr87070	transcription start site region 87070	1846 bp upstream
Tssr91511	transcription start site region 91511	1484 bp downstream
Tssr91512	transcription start site region 91512	1665 bp downstream