rs213946478 SNP Detail

Summary

• ID
  rs213946478
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135042873 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAGGCTGG CCTTGAACTC
  AGAGACCCAC CTACCTCTGC CTTCTGAATG CTGGGAATAA AGGCGTGCGC CTCCACCGCC
  TGGTTCATTA CCAATAGCTT GAATCCCATC TTACCTTTAT GCTGTTACTA GTATACCCCA
  AACACGCAGT GCCTGGGAAG CAGTCTAACT GAACTCAGCA TTTCCAAGCT GAGGGACTTT
  W
  GTTTGTTTTG AGATAGGGCT TCTCTGTGAG ACACCACTGC TTGACTCTAA AATGACCACC
  AATCCATATT GGAAATAGAA AAATACTTTT GAGATTTTGA GCATCTCTTT TGTTGTTGTT
  TATTTGTTTT TGGTTTTCTC TGTATAGCCC TGGCTGTCCT GGACCTCACT CTGTAGACCA
  GGCTGGCCTC GAACTCAGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366824642	MGP_WTSI_5_135489889	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213946478					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366824642	MGP_WTSI_5_135489889	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135042873 () rs orientation: forward

Symbol	Name	Function Class
Abhd11	abhydrolase domain containing 11	1844 bp downstream
Abhd11os	abhydrolase domain containing 11, opposite strand	1231 bp upstream
Gm73578	predicted gene, 73578	617 bp upstream
Rr110217	regulatory region 110217	1073 bp distal
Rr110218	regulatory region 110218	73 bp distal
Rr110219	regulatory region 110219	928 bp proximal
Rr124504	regulatory region 124504	672 bp distal
Tssr1662	transcription start site region 1662	1282 bp upstream
Tssr1663	transcription start site region 1663	849 bp upstream
Tssr1664	transcription start site region 1664	815 bp upstream
Tssr53717	transcription start site region 53717	1258 bp upstream
Tssr53718	transcription start site region 53718	1211 bp upstream
Tssr53719	transcription start site region 53719	1196 bp upstream
Tssr53720	transcription start site region 53720	1151 bp upstream
Tssr53721	transcription start site region 53721	894 bp upstream
Tssr53722	transcription start site region 53722	861 bp upstream