rs213948456 SNP Detail

Summary

• ID
  rs213948456
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122827543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGCAGAG AGAAAAGCGT
  CAGCGTTCAG TGTATTGGAT TTACGATCTT CAACAGGAAA CCCGCTGGGT ACGGCGGCTG
  TGAGGACATT AGGAGGCTTT CCACCATAAT GGGGTTGTTG GTTTGCTGAA TCTAGAGAGA
  ATGAGTCTTC AGGAGATGTT AGGAATGGCT GTGACTGGAG GGCAGTGGTA ACTGTCCAAA
  R
  GTAATCCCTT GCCTGTACAG AGGAAGGAGC TGACCTGTCA TTCATATGTC CAGTTAGCTG
  AGCAGTGGAG TTATCAGTAG AATTGCTTTC TGGTAGACTT AGTTTGTACA CGTAGTCCCA
  ATAATCATAT GACCTGGAGG AATCAAAATT ATATCTACAT ATACTGCGAT TGTCCATAAT
  GAACAGATCA CGGTATACAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369914791	MGP_WTSI_6_122800602	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213948456					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369914791	MGP_WTSI_6_122800602	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122827543 () rs orientation: forward

Symbol	Name	Function Class
C3ar1	complement component 3a receptor 1	within coordinates
Tssr58711	transcription start site region 58711	75 bp downstream
Tssr58712	transcription start site region 58712	within coordinates
Tssr58713	transcription start site region 58713	47 bp upstream
Tssr62975	transcription start site region 62975	1973 bp upstream
Tssr62976	transcription start site region 62976	1884 bp upstream
Tssr62977	transcription start site region 62977	1826 bp upstream
Tssr62978	transcription start site region 62978	1772 bp upstream
Tssr62979	transcription start site region 62979	1739 bp upstream
Tssr62980	transcription start site region 62980	1723 bp upstream
Tssr62981	transcription start site region 62981	1704 bp upstream
Tssr62982	transcription start site region 62982	1545 bp upstream
Tssr62983	transcription start site region 62983	1087 bp upstream
Tssr62984	transcription start site region 62984	991 bp upstream
Tssr62985	transcription start site region 62985	952 bp upstream
Tssr62986	transcription start site region 62986	657 bp upstream
Tssr62987	transcription start site region 62987	531 bp upstream
Tssr62988	transcription start site region 62988	465 bp upstream
Tssr62989	transcription start site region 62989	305 bp upstream
Tssr62990	transcription start site region 62990	252 bp upstream
Tssr62991	transcription start site region 62991	223 bp upstream
Tssr62992	transcription start site region 62992	173 bp upstream
Tssr62993	transcription start site region 62993	80 bp upstream
Tssr62994	transcription start site region 62994	within coordinates
Tssr62995	transcription start site region 62995	98 bp downstream
Tssr62996	transcription start site region 62996	158 bp downstream
Tssr62997	transcription start site region 62997	300 bp downstream
Tssr62998	transcription start site region 62998	355 bp downstream
Tssr62999	transcription start site region 62999	426 bp downstream
Tssr63000	transcription start site region 63000	483 bp downstream
Tssr63001	transcription start site region 63001	506 bp downstream