rs213949106 SNP Detail

Summary

• ID
  rs213949106
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153425841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGCTCCTG CACCTCTTGG
  ATACCCACTG TCCTTATTAT TCTGAGTCCG GGAGTTCTCC TCCTGTTCAA GTCCTGCAAG
  TGCCAAGTCT TGTTTGCATT GGATGTGAGA TGTTGTGATA CAGTGGTGGC TGCCTAGCAG
  CCACTTGGCT CTCTAGACTG ACACTACTGC TCCAGTCCTG CCCATTGCCT TGTAGGAAAA
  R
  GGAGAAGTGA GAAGATTTTA AGAGTGGATT ACAGGCCACA GGTGGTTGTG CGCTCCTTTA
  ATCCCAGCAC TTGGGAGGCA GAGACAGGAG GATTTCTGGG TTCAAGGCCA GCCTGGTCTA
  CAGAGTGAGT TCAGGACAGC CAGGGCTATA CAGAAAAACC AAAACCAAAA AACAAAACAA
  AACAAACAAA CAAAAAACAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351975356	MGP_WTSI_1_155397225	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213949106					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351975356	MGP_WTSI_1_155397225	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153425841 () rs orientation: forward

Symbol	Name	Function Class
Cpgi868	CpG island 868	234 bp distal
F630010C12Rik	RIKEN cDNA F630010C12 gene	384 bp upstream
Npl	N-acetylneuraminate pyruvate lyase	381 bp upstream
Rr420697	regulatory region 420697	61 bp distal
Rr420698	regulatory region 420698	within coordinates
Rr420699	regulatory region 420699	796 bp proximal
Rr420700	regulatory region 420700	882 bp proximal
Tssr14276	transcription start site region 14276	371 bp upstream
Tssr14277	transcription start site region 14277	350 bp upstream
Tssr14278	transcription start site region 14278	267 bp upstream
Tssr14279	transcription start site region 14279	240 bp upstream
Tssr14280	transcription start site region 14280	14 bp upstream