rs213955444 SNP Detail

Summary

• ID
  rs213955444
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173420539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGTGCTTT TAGGAACATA
  GCAATCCAAG CTAACCTGGG CCACGCTGGA ACAGGCAGAG GCTTGGGTGG AAATGGCATC
  AAACCCGTGT GCCCTGACGT TGTGACATCC TCGGAGGGAG AAAAGTATGG AACACATCTG
  ATGGGAAGGC TAGGCTTAAA CCTTTTCAGG GGAAGCTCAA ACCGCAGGGT TGGGAGGGTG
  W
  AGGCCCTCAA ATACCACCAG ACCCAAAGCA AGGCCTTTAG GGGCTAGAGG AAGCACCATG
  GAACGGGCAG GGAGCCAGAA CGCCCTTCAA AAACTCTGTT GTTACCACGA ACAAAATAGA
  AGCTTGAAAA ATAGTTTGTA TAGCAGTTAC ACAAATTTGG TCTAAGGCAT GGTGGTCCAG
  GCCACCCACT CACTTGGGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320625292	CHEV_2_173404247	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213955444					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173420539 () rs orientation: forward

Symbol	Name	Function Class
Ankrd60	ankyrin repeat domain 60	473 bp upstream
Cpgi12846	CpG island 12846	within coordinates
Gm74867	predicted gene, 74867	within coordinates
Gm74874	predicted gene, 74874	within coordinates
Rr571985	regulatory region 571985	797 bp distal
Rr571986	regulatory region 571986	within coordinates
Tssr27995	transcription start site region 27995	566 bp upstream
Tssr27996	transcription start site region 27996	547 bp upstream
Tssr27997	transcription start site region 27997	535 bp upstream
Tssr27998	transcription start site region 27998	468 bp upstream
Tssr27999	transcription start site region 27999	412 bp upstream