rs213958033 SNP Detail

Summary

• ID
  rs213958033
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164619299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCCTTCCA GTCACAGAGC
  CCAAAGGAGC AGCCTTTCCC GTGTGAGGCA GGGAAAGCAA AGGTGGAGCT GCCCACGCCC
  AGGGGACCTG CAGTCTGGAT GGACACGAAC AAAGACCGTC TCCTTACTGA ACGCCCTCCA
  TCATCTTCAG AAACTCTGCG AAGAAGAGGG ACTAGGTCAG GCGTACCGTT CAGGGCACAG
  S
  GGGTGCCTAC TCGTTACCGT CAATAGAATG AGAAGGAATT TAGTCTATTC CCAGCCCCAC
  CCACAAAGCC AAGAGCACCA GCTGGCCCTC ACCATCAAAG TCAATGCGGC CGTCGTTGTT
  TTTATCACCA TCCTTCATCA GGGATTCGAT CTCCTCTTCT GTCACATGCT CCCCAGAAGC
  CCGGAAAATC TCAGCTAGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356440673	MGP_WTSI_2_164602879	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	G	G	C	C	C	C	G	G	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	G	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213958033					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	G	G	C	C	C	C	G	G	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	G	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356440673	MGP_WTSI_2_164602879	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164619299 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12669	CpG island 12669	within coordinates
Tnnc2	troponin C2, fast	within coordinates
Tssr760	transcription start site region 760	442 bp downstream
Tssr21644	transcription start site region 21644	106 bp upstream
Tssr21645	transcription start site region 21645	140 bp upstream
Tssr21646	transcription start site region 21646	178 bp upstream
Tssr21647	transcription start site region 21647	363 bp upstream
Tssr21648	transcription start site region 21648	563 bp upstream
Tssr27530	transcription start site region 27530	428 bp downstream
Tssr27531	transcription start site region 27531	594 bp downstream
Tssr27532	transcription start site region 27532	612 bp downstream
Tssr27533	transcription start site region 27533	656 bp downstream
Tssr27534	transcription start site region 27534	697 bp downstream
Tssr27535	transcription start site region 27535	827 bp downstream