rs213966491 SNP Detail

Summary

• ID
  rs213966491
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:115820191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCCCTATA CCCTCCCCCC
  TTCCTGCTCC CCTACCCACC CACTCCCACT TCTTGGCCCT GGCGTTCCCC TGTACTGGGG
  CATATAAAGT TTGCAAGACC AAGGGGCCTC TCTTCCCAAA GATGGCTGGC TAGGCCATCT
  TCAGGCAAAA CGTTCTTAAT AGTGCTTCAT CTACGAGGCT TCCACTTAAA GGTTAAAAAA
  M
  AAAAAAACAA AAAAAAAAAA AAAAACAGCC TGTCATAAAT ATAAAGATAG CATCAGGTAC
  AGTACGAAGA ATGTGATTGG TTAGAACAGC TTGAACAGAA TAAAGAAATA CAAATGGTGT
  TTTAAGTTTT ATTCATAAAG TATCAAGAGT GATTTCTATC CATTGACGAG GAGTATGTGG
  CTGTGGATGA GCCTGGTCAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320893982	CHEV_3_115729460	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213966491					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115820191 () rs orientation: forward

Symbol	Name	Function Class
Extl2	exostosin-like glycosyltransferase 2	Intron
Rr583641	regulatory region 583641	507 bp distal