rs213968707 SNP Detail

Summary

• ID
  rs213968707
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60939942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGTTGGCA AGCCAATGAG
  AATTAGCTGT GTCTGTGATG TCATAAGTTA CCAGGCAGAC AGGTTTTCTG GAGTTTCCTA
  AATTACCCTT CCTGGTTGCT GGAGTAGGCA GGATGCAAAC TTATCACGAG AATTTCCAAT
  GTAGTTCGTC TTACTTAGTC TGAGTCTGCG TTACTATAAT AGAAAGCCAC AGACTGGGTC
  R
  TTTATATAAA TAATAATAAA ATCTGGAGAT TTAGCCGGAC GTGGTGGCAC ACGCCTTTAA
  TCCCAGCACT CGGGAGGCAG AGGCAGGCAG ATTTCTGAGT TCGAGGCCAG CCTGGTCTAC
  AAAGTGAGTT CCAGGACAGC CAGGGATATA CCCCCTACAT ACACACCACA CACCACTCAT
  GCACACACCA CACCACACCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400867896	MGP_WTSI_18_60966524	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213968707					SNP	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400867896	MGP_WTSI_18_60966524	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60939942 () rs orientation: forward

Symbol	Name	Function Class
Cd74	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	within coordinates
D18Mit78	DNA segment, Chr 18, Massachusetts Institute of Technology 78	1805 bp proximal
Rr405670	regulatory region 405670	1711 bp downstream
Rr405671	regulatory region 405671	913 bp downstream
Rr405672	regulatory region 405672	57 bp downstream
Tssr5344	transcription start site region 5344	801 bp upstream
Tssr151328	transcription start site region 151328	1853 bp downstream
Tssr151329	transcription start site region 151329	1782 bp downstream
Tssr151330	transcription start site region 151330	902 bp downstream
Tssr151331	transcription start site region 151331	883 bp downstream
Tssr151332	transcription start site region 151332	127 bp upstream
Tssr151333	transcription start site region 151333	665 bp upstream
Tssr151334	transcription start site region 151334	1029 bp upstream
Tssr151335	transcription start site region 151335	1038 bp upstream
Tssr151336	transcription start site region 151336	1072 bp upstream
Tssr151337	transcription start site region 151337	1126 bp upstream
Tssr151338	transcription start site region 151338	1182 bp upstream
Tssr151339	transcription start site region 151339	1361 bp upstream
Tssr153493	transcription start site region 153493	1185 bp downstream
Tssr153494	transcription start site region 153494	1207 bp downstream
Tssr153495	transcription start site region 153495	1423 bp downstream