rs213970362 SNP Detail

Summary

• ID
  rs213970362
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:32126215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGATCGCCC AGCCCCATTG
  CTACAATCTT AAACCGGATG TCACCCAATG CTAAGCTAAC TTGTAAAAAC TGAATTTTGG
  CAAAACATCT GGAGTCGGTT CGGGCTTGGC TTGCCATCTG AGCGTGATTG TAATACCCAC
  CCACCTAAAA AGGCATGATT GTAATACCTG CGCTGGGGAA GCAAAGGCAG TAGTTCAAAG
  Y
  CATCATCCTC TACATAGCGA GCCTGAGACC TTGGGGAGGA GGAGGGACAG ACAGCTTGTA
  GGCATTCCAG TGTGGGAAGA GTTGAGAAAA AGCGATCCAC CACTCACACA GCTCCAGGAG
  GTACAACGCA CCCGAGGCTT CAAAGCTCTT ACTCCTGCCC GTAAGCTAAC GCGCTGCTTA
  ACGAAACCGC TAAAGTAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353553904	MGP_WTSI_2_32091723	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213970362					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353553904	MGP_WTSI_2_32091723	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32126215 () rs orientation: forward

Symbol	Name	Function Class
Gm13610	predicted gene 13610	within coordinates
Pomt1	protein-O-mannosyltransferase 1	387 bp upstream
Prrc2b	proline-rich coiled-coil 2B	1666 bp downstream
Rr554847	regulatory region 554847	within coordinates
Rr554848	regulatory region 554848	181 bp proximal
Rr554849	regulatory region 554849	1201 bp proximal
Tssr17254	transcription start site region 17254	376 bp upstream
Tssr17255	transcription start site region 17255	398 bp upstream
Tssr17256	transcription start site region 17256	428 bp upstream
Tssr17257	transcription start site region 17257	1094 bp upstream
Tssr23466	transcription start site region 23466	148 bp downstream
Tssr23467	transcription start site region 23467	162 bp downstream
Tssr23468	transcription start site region 23468	174 bp downstream