rs213977653 SNP Detail

Summary

• ID
  rs213977653
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113619076 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCGCCCCTG CCCCCTCCGC
  TCTAGGTGTT TTCTGTTGTA GCATTTTATG TGAGTGGGAC CATCCTGCGT GCACTGTCCT
  TTGCGAATGG CTTCAGCATT TAGCAAGTCT TAAAGGGTCA TCCACGTTGT AGTCAATGTG
  AGTTCTGTAT CCCCTTCCTT CCTTCCGTCC CCTCCCTCAT GTCTCTCTTC CACCCCTTCA
  R
  TTTCTCTCAT TTACTCTCCT CCCTCCTTTT CCAGTGATGA AAACAGAACC CAGGGTCTCT
  CACATGCAGG GCTGTGCTCC TTGTTCTAGT ATCTCTGCCT CTCTGTCTCT GTCTGTCTCT
  CTGTCTCTGT CTCTCTGTCT CTCTCTAACT TTTGGGTTTT CGAGACAGGG TTTCTCTGTG
  TAGTTCTGGC TGTCCTGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321911286	CHEV_6_113592109	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213977653					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113619076 () rs orientation: forward

Symbol	Name	Function Class
Gm43964	predicted gene, 43964	555 bp upstream
Irak2	interleukin-1 receptor-associated kinase 2	within coordinates