rs213978339 SNP Detail

Summary

• ID
  rs213978339
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110485421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCTCAGGG AATGTTTCTC
  AAGGCATTCG CTCTTGAAGA ATTGGCACAA GTGGATAAGG ATGGCTAAAT ATTCCAAGAG
  GGCAGTTAGG AGAGGTGGGT GGTGGTTAGG CAAAACCAGA GCAATCGACT CTCTCTATTC
  TCTTCCTCTC AGGTCTGATT CTATTTGCTT TCTCACAAAT TAAGTGTCGG ACAAATCGAA
  Y
  CTTAACGCCT TTGCCCACAA CCCAGCCGGC TCACTCGCTG TACAGGTGCT CCAGATCAAG
  GGGCGTGGAC TTTTGTATCA ACTCAGCATT GATTGGTTCT CAGGGCTTCC GGCTCTCCAT
  TGTCTCCCTT GGATTGGCCG TAAGACATTC TCCTGCTCAC TGAGCCTGCG CGAGGCAGAA
  GTGAAAAGGA GGTGGGGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378907305	MGP_WTSI_9_110558857	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs213978339					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378907305	MGP_WTSI_9_110558857	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110485421 () rs orientation: forward

Symbol	Name	Function Class
Ccdc12	coiled-coil domain containing 12	150 bp upstream
Cpgi22385	CpG island 22385	1913 bp distal
Cpgi22386	CpG island 22386	within coordinates
Gm42470	predicted gene 42470	within coordinates
Gm69744	predicted gene, 69744	within coordinates
Rr401701	regulatory region 401701	1974 bp downstream
Rr401702	regulatory region 401702	within coordinates
Rr687156	regulatory region 687156	1702 bp distal
Rr687157	regulatory region 687157	664 bp distal
Rr687158	regulatory region 687158	within coordinates
Rr687159	regulatory region 687159	385 bp proximal
Tssr87398	transcription start site region 87398	113 bp upstream
Tssr87399	transcription start site region 87399	141 bp upstream
Tssr91646	transcription start site region 91646	29 bp downstream