rs213988402 SNP Detail

Summary

• ID
  rs213988402
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:61901055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAAGTGGA GAAGATCCCC
  ACTACACAGC TGCCTCCAGT GTCACAGAAT ACAGCTGTGA GCTCCTGGCA GCCATAAGTG
  CCCTCACTCC TCCAGGAGAT AGATGCATGT GCCACCCGCA GTCTGTGGTC CCCTTTCAGG
  GGATGGGCGT GTGGAAATCT CCAAGAGCTG GACAGAGTAC TCTATACAGA ATGGAGGGGG
  Y
  CTAAAACTTA GTGGGGCACA GATAGAACCT GAGAAGGAGA GGCAGGGAGA GTCTTGAGAC
  GAGGGGAAGT TGCTCCCCAC AACCCCAGAA CCTTAGAACC AGGTGGTAAA GTGCGGCCTC
  GGGTGTGGCT CTCACGTTGA TTACACTTGA CGTTAGATTT CCTATGATTC CCACATTTCC
  AGCTGCTCTG GAAGATCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323330696	CHEV_10_61528024	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs213988402					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:61901055 () rs orientation: forward

Symbol	Name	Function Class
D10Mit149	DNA segment, Chr 10, Massachusetts Institute of Technology 149	1852 bp proximal
Tssr93687	transcription start site region 93687	1339 bp upstream