rs214003558 SNP Detail

Summary

• ID
  rs214003558
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:21874048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAGC ACCATCCGCC CGCCAAACTG
  W
  GTTTACAGTC TGCAGCGGGT CTGTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss642091062	FVB_NJ_9_21767196	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	T	T	A	A	T	A	A	T	A	T	A	T	A	T	T	T	T	A	T	A	T	A	T	A	A	T	T	A	A	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214003558					SNP	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	T	T	A	A	T	A	A	T	A	T	A	T	A	T	T	T	T	A	T	A	T	A	T	A	A	T	T	A	A	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss642091062	FVB_NJ_9_21767196	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:21874048 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi21464	CpG island 21464			1842 bp distal
Cpgi21465	CpG island 21465			within coordinates
D9Mit86	DNA segment, Chr 9, Massachusetts Institute of Technology 86			1217 bp proximal
Epor	erythropoietin receptor			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr675079	regulatory region 675079			1895 bp distal
Rr675080	regulatory region 675080			1214 bp distal
Rr675081	regulatory region 675081			1180 bp distal
Rr675082	regulatory region 675082			744 bp proximal
Rr675083	regulatory region 675083			1840 bp proximal
Tssr2805	transcription start site region 2805			428 bp upstream
Tssr88426	transcription start site region 88426			385 bp upstream
Tssr88427	transcription start site region 88427			355 bp upstream
Tssr88428	transcription start site region 88428			791 bp downstream
Tssr88429	transcription start site region 88429			816 bp downstream
Tssr88430	transcription start site region 88430			843 bp downstream