rs214006588 SNP Detail

Summary

• ID
  rs214006588
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69838342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGCGTGAC GGCTGCCTGG
  CAAAGGGTAG AGGTATAATG AGTTACTAGA ATAGACTCGT GGTGGTCTGG GACCCTCCCC
  AGAAATCATG TGCAAATGTG AATGCCTACT CTTTTTGACT TTTGTCTTCT CGATAGCTTT
  GCCTTGCCCA GAATATCGCG TACATGGAAA CATACAGTGC ACAGCTTTTA TTGAGTCAGA
  K
  TCTCACTTCA CAGAATACAT CTGAGAGCCA CACACATCTT GCATTTAGCA GCAGTGTCTT
  CCTGTTTATT GCCGGGTAGC GTTCTGTTGT ATGAACGTAC TGACTGGTAT TTATTTGTTT
  ATTCAATCCT GGTTGAAGGA TATTTGGATT GTTTCCAGTG TGGGGTGATT ATACATGAAG
  CCGCTATAGA CGCCGTGCAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324085705	CHEV_12_70892555	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214006588					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69838342 () rs orientation: forward

Symbol	Name	Function Class
4930512B01Rik	RIKEN cDNA 4930512B01 gene	within coordinates
Cdkl1	cyclin dependent kinase like 1	301 bp upstream
Cpgi4702	CpG island 4702	168 bp distal
Rr257091	regulatory region 257091	259 bp proximal
Rr265514	regulatory region 265514	within coordinates
Tssr116527	transcription start site region 116527	1295 bp upstream
Tssr116528	transcription start site region 116528	1292 bp upstream
Tssr116529	transcription start site region 116529	1270 bp upstream
Tssr116530	transcription start site region 116530	937 bp upstream
Tssr116531	transcription start site region 116531	833 bp upstream
Tssr116532	transcription start site region 116532	275 bp upstream
Tssr116533	transcription start site region 116533	273 bp upstream
Tssr116534	transcription start site region 116534	245 bp upstream
Tssr116535	transcription start site region 116535	230 bp upstream
Tssr116536	transcription start site region 116536	204 bp upstream