rs214037217 SNP Detail

Summary

• ID
  rs214037217
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:48049525 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATACGAAGC ATTTCTCAAA
  AGTATGTTTC CTAAGAAGAA AAGCATATAT TCCAAGAGAT CAGGATATGC TGTTTTTAAT
  GGCTTTGTTT TTGTCCTTTT ATACTCAATA TATTCATTTA AGGGATCACT TGGGGAGATA
  GGGAACATTT TTATTGATCT AAAACCCAAA CGATTTGTGA GGCAGGAGTT TGGATGATTG
  M
  GGCTCAGAGG CAAGGGAAAC CCATGTGAGC TACAAACAGA AGTAAGTATA AAGGCCTCAG
  ATTTAGTTTA CACAACCTCT TTACAAATTT GGTAAAGGTA GAAGAGGTGG GCCTGGGTAG
  GCACCAAAGA TACACAGATA GAGTCACTCT CCTGCTGGAG ACTTCAGAAA GACAAAGAGC
  AATAGGGAGA GGACAGAATG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361430119	MGP_WTSI_4_48062397	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214037217					SNP	C	C	C	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361430119	MGP_WTSI_4_48062397	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48049525 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14279	CpG island 14279	794 bp distal
Cpgi14280	CpG island 14280	431 bp distal
Cpgi14281	CpG island 14281	1965 bp proximal
Nr4a3	nuclear receptor subfamily 4, group A, member 3	within coordinates
Rr591930	regulatory region 591930	1837 bp distal
Rr591931	regulatory region 591931	1479 bp distal
Rr591932	regulatory region 591932	178 bp distal
Rr591933	regulatory region 591933	1954 bp proximal
Tssr37201	transcription start site region 37201	1772 bp downstream
Tssr37202	transcription start site region 37202	1637 bp downstream
Tssr37203	transcription start site region 37203	1609 bp downstream
Tssr37204	transcription start site region 37204	1436 bp downstream
Tssr37205	transcription start site region 37205	1406 bp downstream
Tssr37206	transcription start site region 37206	1242 bp downstream
Tssr37207	transcription start site region 37207	462 bp downstream
Tssr37208	transcription start site region 37208	433 bp downstream
Tssr37209	transcription start site region 37209	401 bp upstream
Tssr37210	transcription start site region 37210	1252 bp upstream
Tssr37211	transcription start site region 37211	1729 bp upstream
Tssr37212	transcription start site region 37212	1752 bp upstream
Tssr37213	transcription start site region 37213	1842 bp upstream
Tssr37214	transcription start site region 37214	1854 bp upstream
Tssr37215	transcription start site region 37215	1905 bp upstream
Tssr37216	transcription start site region 37216	1998 bp upstream
Tssr41635	transcription start site region 41635	462 bp upstream
Tssr41636	transcription start site region 41636	418 bp upstream