rs214045530 SNP Detail

Summary

• ID
  rs214045530
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:6952011 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCGTCCCA GTCCTGGCTA
  TTGTAAGCCA AACGGCCAAA TCTACACGCC CCCACCCCGA GCTCTTCCTT GAGGGGCGTG
  AGACCAGACC AAGTAGGGCA TCCCGGCCGG CACCTGGGCA GTGCCTGGAC CCCTTTACAC
  CTCCGATCCC CGGAAGCCCT GTCCACGTGT CGACCCATGC GCGGAAGTTC TCTCGCCCCT
  Y
  GATGACCAAG GGTCCCGCAC GTTCCTCACC GCATCTGCGC CCACACCGTC TCATGCCTAG
  ACTGTCTGTT TCTACCTTAG TGACAGAATG AAACAGGGTC AGAAGAGGAC TATGGTCCTA
  GTGGCGTGAA GATCCAGGCA TCCGACACCT AGAAGTCTAG GTTTGAGGCC AGAGGTTAAG
  TTATAGGAAA CCGGACAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401683898	MGP_WTSI_19_7049133	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214045530					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401683898	MGP_WTSI_19_7049133	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6952011 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10537	CpG island 10537	within coordinates
Plcb3	phospholipase C, beta 3	273 bp upstream
Ppp1r14b	protein phosphatase 1, regulatory inhibitor subunit 14B	405 bp upstream
Rr370444	regulatory region 370444	1331 bp upstream
Rr543522	regulatory region 543522	within coordinates
Rr543523	regulatory region 543523	545 bp proximal
Tssr154704	transcription start site region 154704	within coordinates
Tssr154705	transcription start site region 154705	308 bp upstream
Tssr154706	transcription start site region 154706	405 bp upstream
Tssr154707	transcription start site region 154707	433 bp upstream
Tssr154708	transcription start site region 154708	468 bp upstream
Tssr154709	transcription start site region 154709	479 bp upstream
Tssr154710	transcription start site region 154710	495 bp upstream
Tssr154711	transcription start site region 154711	569 bp upstream
Tssr154712	transcription start site region 154712	1730 bp upstream
Tssr154713	transcription start site region 154713	1772 bp upstream
Tssr154714	transcription start site region 154714	1813 bp upstream
Tssr154715	transcription start site region 154715	1831 bp upstream
Tssr154716	transcription start site region 154716	1857 bp upstream