rs214054975 SNP Detail

Summary

• ID
  rs214054975
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:142417556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCCAACTC TGACATTATG
  CTGACCCTCA ACATGTGCAA GGAAGAAATA GAATCTTCAT TCATTCTCAG CTCCCATCTT
  CAATTTGTAA AGGTTGTATC ATTTACCCTC TCCCCTCATC TCTCTGACAG GCTTTGTATG
  ATCTTGCAGA ATTCAGGAAA TCTATTCACC TGTTAATATT CCCTTGAGAT TTTTAAAACA
  R
  GCATAATGGC ACACACTTTT TAATCCCAGC ACTTGAATCT GTAATTTTCC AGGCCAACCA
  TAACTAAACT GTGAGTTCAT GTGTCAACAT CCTAAAACTG GAAGATAAAT CTCTAAGAGT
  TGATTTTCAC ATAGCCTTAT AAATACCTCT ATTAGAAAAA TCACTTAGGT TGCCTCATCC
  ATCTTTCATT TTCAAAAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322044825	CHEV_6_142420350	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214054975					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:142417556 () rs orientation: forward

Symbol	Name	Function Class
Gys2	glycogen synthase 2	within coordinates
Tssr63950	transcription start site region 63950	968 bp downstream
Tssr63951	transcription start site region 63951	983 bp downstream
Tssr63952	transcription start site region 63952	1014 bp downstream
Tssr63953	transcription start site region 63953	1067 bp downstream
Tssr63954	transcription start site region 63954	1130 bp downstream
Tssr63955	transcription start site region 63955	1159 bp downstream
Tssr63956	transcription start site region 63956	1245 bp downstream