rs214069850 SNP Detail

Summary

• ID
  rs214069850
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116388152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTTATCG TTCAAAAACA
  ATAACTATAA TTAATTAGAA CCCAGTTAAT AAAACCTAGT GATCTTTTTC AAGCACTCCT
  TTATAAAAAT AATCACTTCC CCTGAGGATG GGGGACTAGC GGAAGGAAGG ATGAGTGTAA
  GGGTCTCTGA GACAGCAGAG GGAGCTTTTA GTACAAGAAA GCAATGCTCC TCGGGGGCTC
  S
  TCGCGGCTCC GAGCGGTGGG CAGAACTGCA TTTACTTAAA TCCATGGGAC GGAAGCAGGA
  ACCTGTCAAA GGGGCGAGAC TGGGGTCCAG CACCCACAGA CCCGCGACTC CCAGGAAGGG
  AGGGCGATAG CTGACCTCGG CGGAGCCAGC GTGTTCGCCA CAGAACCTTT TCCCCGCGGC
  CGCCACCATC CTGCAGAAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320895808	CHEV_3_116297421	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214069850					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116388152 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13737	CpG island 13737	within coordinates
Rr397965	regulatory region 397965	260 bp upstream
Rr583746	regulatory region 583746	32 bp distal
Rr583747	regulatory region 583747	244 bp proximal
Rr583748	regulatory region 583748	325 bp proximal
Rr583749	regulatory region 583749	518 bp proximal
Rr583750	regulatory region 583750	686 bp proximal
Sass6	SAS-6 centriolar assembly protein	479 bp upstream
Trmt13	tRNA methyltransferase 13	within coordinates
Tssr31360	transcription start site region 31360	456 bp upstream
Tssr35316	transcription start site region 35316	313 bp downstream
Tssr35317	transcription start site region 35317	345 bp downstream