rs214089742 SNP Detail

Summary

• ID
  rs214089742
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30304107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGGATGTG AGCCCTGTCT
  GTCTGCCTGG GCTGGACCTC TAAGCCTAAC TGTGCTACCA ATTGGATGAG CAGAAACTAG
  CAAGAGCGGC CACCTGCCTG GACTGGAAAG AGAAGACAAG ACTCACAATT CAGGCGTGAA
  GGGTGGTGAG GCAGTAGCCA CTGGCGTGGT AGCATCTAAG GCTGGAGCAG TGGTAGCTGT
  K
  GGGCTGCAGA TGCCGCTCTG CCTCTCGCTA GCCTCCAGAA GAGGAGGAGT AAGGCAGGTA
  AGTGGGCTGG AAGTAGGTAC TGAGGTAAGA GGAGACTGGG AGCTCTCTCC TGTCTTCTTT
  AGATGGGCCC AGTGCCAGGG AGGCAAGCCA AGAGAGGTAT TAAAAAATCC ACCTGTCAAA
  ATCTTCATAG ATCTTTTTGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353515384	MGP_WTSI_2_30269615	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214089742					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353515384	MGP_WTSI_2_30269615	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30304107 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11436	CpG island 11436	996 bp proximal
Crat	carnitine acetyltransferase	within coordinates
Gm16323	predicted gene 16323	within coordinates
Ptpa	protein phosphatase 2 protein activator	1955 bp upstream
Rr554310	regulatory region 554310	369 bp distal
Rr554311	regulatory region 554311	within coordinates
Rr554312	regulatory region 554312	589 bp proximal
Rr554313	regulatory region 554313	1419 bp proximal
Tssr17115	transcription start site region 17115	1523 bp upstream
Tssr17116	transcription start site region 17116	1936 bp upstream
Tssr17117	transcription start site region 17117	1985 bp upstream
Tssr23368	transcription start site region 23368	796 bp upstream
Tssr23369	transcription start site region 23369	9 bp downstream
Tssr23370	transcription start site region 23370	74 bp downstream
Tssr23371	transcription start site region 23371	1207 bp downstream
Tssr23372	transcription start site region 23372	1294 bp downstream
Tssr23373	transcription start site region 23373	1323 bp downstream
Tssr23374	transcription start site region 23374	1343 bp downstream
Tssr23375	transcription start site region 23375	1365 bp downstream
Tssr23376	transcription start site region 23376	1414 bp downstream
Tssr23377	transcription start site region 23377	1477 bp downstream
Tssr23378	transcription start site region 23378	1519 bp downstream
Tssr23379	transcription start site region 23379	1539 bp downstream
Tssr23380	transcription start site region 23380	1672 bp downstream
Tssr23381	transcription start site region 23381	1908 bp downstream