rs214093299 SNP Detail

Summary

• ID
  rs214093299
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:27387379 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACGTTTAC TTTGGGGACT
  TATGAATTCC TGTTCGGACA CATGTAAGGC TCAGTCCTGT CGTGCTTGCA GGCCACAGGC
  TATACAAAGG GTATCTGAAA CTGACATTCC TAATGAAGTT TTTTTTTTTT TATATATAAA
  ATTTGGCCCT TAGAATAACT GAGAAATATC CTGAAAAACC TTCCCTGAAA CTGTAATAAA
  S
  AAAGTTTCTT TATCTACTGA TAAAATCGAC AACTCAGTAA GCTAGTTTCG CTGGTCTTCC
  TACATAAGAA AAAAGCACAA ATATAGTTGC CTCAGAAATC TGTTAAAAGC AGAGAACCTT
  GCAGGAAAAA GAGTATAAAG ATTCTAGAAA TGAGAGAGTA CAAGAAAACC TCTCTTCCAA
  GTGTCCACAA AGATACATAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385383300	MGP_WTSI_12_28022245	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214093299					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385383300	MGP_WTSI_12_28022245	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:27387379 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4506	CpG island 4506	1367 bp proximal
Rr464224	regulatory region 464224	1228 bp distal
Rr464225	regulatory region 464225	85 bp distal
Rr464226	regulatory region 464226	414 bp proximal
Sox11	SRY (sex determining region Y)-box 11	mRNA-UTR
Tssr113042	transcription start site region 113042	1157 bp downstream
Tssr113043	transcription start site region 113043	1007 bp downstream
Tssr113044	transcription start site region 113044	1983 bp upstream
Tssr115962	transcription start site region 115962	1795 bp upstream
Tssr115963	transcription start site region 115963	1316 bp upstream
Tssr115964	transcription start site region 115964	941 bp upstream
Tssr115965	transcription start site region 115965	892 bp upstream
Tssr115966	transcription start site region 115966	813 bp upstream
Tssr115967	transcription start site region 115967	543 bp upstream
Tssr115968	transcription start site region 115968	529 bp upstream
Tssr115969	transcription start site region 115969	448 bp upstream
Tssr115970	transcription start site region 115970	413 bp upstream
Tssr115971	transcription start site region 115971	357 bp upstream
Tssr115972	transcription start site region 115972	244 bp upstream
Tssr115973	transcription start site region 115973	107 bp downstream
Tssr115974	transcription start site region 115974	155 bp downstream
Tssr115975	transcription start site region 115975	195 bp downstream
Tssr115976	transcription start site region 115976	217 bp downstream
Tssr115977	transcription start site region 115977	231 bp downstream
Tssr115978	transcription start site region 115978	863 bp downstream
Tssr115979	transcription start site region 115979	955 bp downstream
Tssr115980	transcription start site region 115980	1122 bp downstream
Tssr115981	transcription start site region 115981	1803 bp downstream