rs214098480 SNP Detail

Summary

• ID
  rs214098480
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:145066476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTAGGTT CAGGACTGGC
  CCTCAGAAAC CTCCCAGGTC TCTATTACGT CACGGACATC TAGGCCCTGA TCCTTACTTT
  GTGCAAAAGC CTGACAGTGT CTTCCCAGGT AGGTGTGTGC CTAAACCCTG CTGGTACTGC
  CATGAGCAAA GATAGAGATA GCTGATAGAG AAACTGCCAA ACAAGGAATT ACGATGTTGT
  Y
  GTTTAATCTG CCAAATATAC AAGTTGAATT TGAGGAGCAT GTCTTGTCTG GGTGACGCAT
  GGTAACCAGA GGTTTCTTGA AATGATCAAT GGGTAGGGTT AAAAACGGGC ACTAGCCCAG
  ACCAGGTGGG TGGGAAGGGG ACAGAACAGA GAGGAGAGGC CTCATCGGAC GGAACTGGCC
  AGGCACAAAC CTTGGCCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367055522	MGP_WTSI_5_145890535	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214098480					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367055522	MGP_WTSI_5_145890535	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:145066476 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Arpc1b	actin related protein 2/3 complex, subunit 1B			Intron
				mRNA-UTR
Pdap1	PDGFA associated protein 1			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr49735	transcription start site region 49735			1751 bp downstream
Tssr49736	transcription start site region 49736			1728 bp downstream
Tssr49737	transcription start site region 49737			1667 bp downstream
Tssr49738	transcription start site region 49738			1659 bp downstream
Tssr49739	transcription start site region 49739			1632 bp downstream
Tssr49740	transcription start site region 49740			1549 bp downstream
Tssr49741	transcription start site region 49741			1778 bp upstream
Tssr54417	transcription start site region 54417			1607 bp upstream
Tssr54418	transcription start site region 54418			1510 bp upstream