rs214102215 SNP Detail

Summary

• ID
  rs214102215
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48689297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATCCCAGC AAACTCTGGC
  AACTCTCACT GCTCGGCCTA CGGATCCCAG CCAAAAGCCT TTGCAATGGA ACTATTCCCC
  AGATACCCAC AAGATATTGT GCTTTCACAT CTGCCTATGG CTTCCCTCCA AACTTAACCT
  CACTGTCTTA CCCCACCATG ATAAGACGTA AACTACAAAC AAAACAAAAT GGCCATCCGG
  Y
  TTCTTTCTTC CTTCGGTTCT TATCTGTGAC CTAAGCTGGC TTGCCTGGAA TTTACTAAAT
  AGACTAGGTC AGCCGTGACA TCAGTGATCT TCCTACTTCT GCCTCCTGAA CACTCGGATC
  CCAAACCTCT GACACCATGC TTAGTCTCCT ATATTCCTTT ATTCTCCGCA CTACCATATT
  TTATAAGTAC TAATTTCAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323664624	CHEV_11_48611972	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214102215					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48689297 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2778	CpG island 2778	1485 bp proximal
Gm36109	predicted gene, 36109	within coordinates
Rack1	receptor for activated C kinase 1	1890 bp upstream
Rr234057	regulatory region 234057	1897 bp distal
Rr246622	regulatory region 246622	within coordinates
Tssr101138	transcription start site region 101138	1571 bp upstream
Tssr101139	transcription start site region 101139	1887 bp upstream
Tssr101140	transcription start site region 101140	1921 bp upstream
Tssr107634	transcription start site region 107634	931 bp downstream
Tssr107635	transcription start site region 107635	1488 bp downstream