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rs214114905 SNP Detail
Summary
  • ID
    rs214114905
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr1:184466695 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGTATCTAGG CTGCCTGTCT
    CTGTTGCCGG TCTTTTCTAA CAGCCTTGTA ATTCAGTTGC GATTCCAGTT TAACCTCAAG
    ACGTCCAGAC AGCGAAGCGG TCTATAGCCA AGTCCCAGCT CAAAATGACG CTTCGCCCAG
    AGGCCTGCAT CTTCTCCTCC TCCCCTAGAA ATAAGGCTCC CCGCCCCTTT CCCCTCTTTG
    Y
    TCTGTTTGAG TCGGCTGAAC CGGAGTTGTG TGTGTAGAAC AGGAGTGCTC TTGGGTGTCT
    GGCTGCGCCC ACAGCCCAAA CGCATCTGCG GCATTAGAAA CCAGGAGTGC CCCGCAGATC
    AAAGGCTAGG CTGCAAGGAC TGCCTCCTCC GCAGCTCAGC TGTAACTGCA TCATATCTGA
    GCGATCCTCC GTTTTCCCAA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss352673760 MGP_WTSI_1_186558377 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs214114905 SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss352673760 MGP_WTSI_1_186558377 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:184466695 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi1158 CpG island 1158 1259 bp distal
Cpgi1159 CpG island 1159 77 bp proximal
Gm34342 predicted gene, 34342 within coordinates
Rr396693 regulatory region 396693 1648 bp downstream
Rr425266 regulatory region 425266 1714 bp distal
Rr425267 regulatory region 425267 331 bp distal
Rr425268 regulatory region 425268 within coordinates
Tssr10589 transcription start site region 10589 1694 bp downstream
Tssr10590 transcription start site region 10590 908 bp upstream
Tssr15644 transcription start site region 15644 1973 bp upstream
Tssr15645 transcription start site region 15645 1953 bp upstream
Tssr15646 transcription start site region 15646 1871 bp upstream
Tssr15647 transcription start site region 15647 1804 bp upstream
Tssr15648 transcription start site region 15648 522 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory