rs214137371 SNP Detail

Summary

• ID
  rs214137371
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:54970939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAAT TCTTTGCTTT TTTAAAAAAA
  G
  GTATACTGGC TAAATGCAGG AAATG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321805149	CHEV_6_54943948	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214137371					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:54970939 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17470	CpG island 17470	606 bp distal
Ggct	gamma-glutamyl cyclotransferase	992 bp upstream
Rr366742	regulatory region 366742	843 bp downstream
Rr630884	regulatory region 630884	1297 bp distal
Rr630885	regulatory region 630885	1146 bp distal
Rr630886	regulatory region 630886	514 bp distal
Tssr61105	transcription start site region 61105	1076 bp upstream
Tssr61106	transcription start site region 61106	1047 bp upstream
Tssr61107	transcription start site region 61107	1033 bp upstream
Tssr61108	transcription start site region 61108	1018 bp upstream
Tssr61109	transcription start site region 61109	997 bp upstream