rs214137944 SNP Detail

Summary

• ID
  rs214137944
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:56979415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGCGATCA ATGAAGGGGA
  AGGGGCGGGG AGAGAGAGGA GGCGGACCCA TTGGGACTGA CGTATACGCA GGAAAGCCAA
  TAGATACTGG GGGGCGTTCC CTCTCATTCA GGACTCCTCG CCTGGTTCCG GAGGTATGTT
  AAACAGCTGC TTTTAATTTG GTCTCCCCAA TTTCGGTATT TTGGGGGTCT AGTTCTTTGG
  Y
  CGCTTGCTTT GGCTGCACAA AGTCTGTGTG GGTGCTGCAG TCCCCAAGAC AGAGCTACGG
  GGAGGCTCGG AGTCCCGCGG TTGAGGTAGG CTAGGGGCAG GCCAGGAAGG AGAGCGCTTG
  GCGCCGCCCG CTCGTAGTGT GTTTCCAAGC AGGGCTGGAA CGGTGGGGAG GGGGCTGGCC
  CGGCCTGGGT CGCCCTCGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377681835	MGP_WTSI_9_56919938	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	C	C	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214137944					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	C	C	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377681835	MGP_WTSI_9_56919938	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56979415 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi21807	CpG island 21807			within coordinates
Gm10658	predicted gene 10658			165 bp upstream
Gm57026	predicted gene, 57026			1611 bp upstream
Rr368762	regulatory region 368762			11 bp upstream
Rr401391	regulatory region 401391			30 bp downstream
Rr679579	regulatory region 679579			1545 bp distal
Rr679580	regulatory region 679580			200 bp distal
Rr679581	regulatory region 679581			within coordinates
Rr679582	regulatory region 679582			923 bp proximal
Rr679583	regulatory region 679583			1121 bp proximal
Rr679584	regulatory region 679584			1344 bp proximal
Rr679585	regulatory region 679585			1424 bp proximal
Sin3a	transcriptional regulator, SIN3A (yeast)			Intron
				mRNA-UTR
Tssr85282	transcription start site region 85282			83 bp downstream
Tssr85283	transcription start site region 85283			55 bp downstream
Tssr85284	transcription start site region 85284			1604 bp upstream
Tssr85285	transcription start site region 85285			1727 bp upstream
Tssr89752	transcription start site region 89752			269 bp upstream
Tssr89753	transcription start site region 89753			226 bp upstream