rs214153022 SNP Detail

Summary

• ID
  rs214153022
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:109723003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCGGTGAA TATGCATACT
  GTCATGGTAA TACTTGAGAA GTCACAAAAA CATTAAGAGT AGACAATTTC CAAAATAAAG
  ACAGGCATGG TACCTGTAAG TTTAACACGG GAAATAAGCC CCCCTTTTTT GAGAGAACGT
  TTCTCTGTGT AACCTTGGCT GTTCTGGAAC CTACTTTGTA GGAACTAGGA ACTCAGAGAT
  S
  CTCCTGTCTC TGCCTCCCGA GTGCTGGAAC TAAAGGCGCC CTACCATGCC CCTCGACATA
  AGCCTTTTAA AGGGAATCTA TTGATTTCCA TGCAACTTTA GTCTTAAATC TCGAACATCC
  AGGTGCTTTT GTGCTTTGCT AATTTTATAG GCGGACAGGC CCAGGGCACC ATCCCCCTTA
  GTAAGGGGAG GAGTCCAGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322394511	CHEV_7_117267310	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214153022					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:109723003 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19571	CpG island 19571	404 bp distal
Rr400541	regulatory region 400541	1723 bp downstream
Rr400542	regulatory region 400542	84 bp upstream
Rr653190	regulatory region 653190	1740 bp distal
Tssr68487	transcription start site region 68487	1661 bp downstream
Tssr68488	transcription start site region 68488	1501 bp downstream
Tssr68489	transcription start site region 68489	1473 bp downstream
Tssr68490	transcription start site region 68490	1217 bp downstream
Tssr68491	transcription start site region 68491	1018 bp downstream
Tssr74250	transcription start site region 74250	893 bp upstream
Tssr74251	transcription start site region 74251	852 bp upstream
Tssr74252	transcription start site region 74252	767 bp upstream
Wee1	WEE 1 homolog 1 (S. pombe)	Intron