rs214171379 SNP Detail

Summary

• ID
  rs214171379
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8056916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGAAGGGC TGAGGCTGTC
  CAATGATTTG ATGGGCTCCT ATGCTGAGAT GAAACTTGAC CACACACACA GTCTGAACAT
  TGCAGGTCTC TCACTGGACT TCTTCTCAAA AATGGACAAT ATTTACAGTG GAGACAAGTT
  CTATAAGCAG AATTTTAACT TACAGCTACA GCCCTATTCT TTCATAACTA CTTTAAGCAA
  Y
  GACCTGAGAT ATGGTGCTCT AGATTTGACC AACAATGGAA GGTTTCGGCT GGAGCCACTG
  AAGCTGAATG TGGGTGGCAA CTTTAAAGGA ACCTATCAAA ATAATGAGCT GAAACATATC
  TATACCATAT CTTATACTGA CCTGGTAGTA GCAAGTTACA GAGCAGACAC TGTGGCTAAG
  GTTCAGGGTG TCGAATTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385064666	MGP_WTSI_12_8013722	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214171379					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385064666	MGP_WTSI_12_8013722	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8056916 () rs orientation: forward

Symbol	Name	Function Class
Apob	apolipoprotein B	within coordinates
Tssr3782	transcription start site region 3782	1780 bp upstream
Tssr112626	transcription start site region 112626	1998 bp downstream
Tssr112627	transcription start site region 112627	1928 bp downstream
Tssr112628	transcription start site region 112628	825 bp downstream
Tssr112629	transcription start site region 112629	664 bp downstream
Tssr112630	transcription start site region 112630	524 bp downstream
Tssr112631	transcription start site region 112631	287 bp downstream
Tssr112632	transcription start site region 112632	256 bp downstream
Tssr112633	transcription start site region 112633	180 bp downstream
Tssr112634	transcription start site region 112634	35 bp downstream
Tssr112635	transcription start site region 112635	42 bp upstream
Tssr112636	transcription start site region 112636	513 bp upstream
Tssr112637	transcription start site region 112637	586 bp upstream
Tssr112638	transcription start site region 112638	658 bp upstream
Tssr112639	transcription start site region 112639	885 bp upstream
Tssr112640	transcription start site region 112640	938 bp upstream
Tssr112641	transcription start site region 112641	992 bp upstream
Tssr112642	transcription start site region 112642	1044 bp upstream
Tssr112643	transcription start site region 112643	1151 bp upstream
Tssr112644	transcription start site region 112644	1364 bp upstream
Tssr112645	transcription start site region 112645	1466 bp upstream
Tssr112646	transcription start site region 112646	1492 bp upstream
Tssr112647	transcription start site region 112647	1666 bp upstream
Tssr112648	transcription start site region 112648	1678 bp upstream