rs214172178 SNP Detail

Summary

• ID
  rs214172178
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44147859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAT ATAAACATCC AAGCCCCATG
  R
  TAAGCTTGCT GTTGGGAGAG GCAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322199054	CHEV_7_51753805	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214172178					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44147859 () rs orientation: forward

Symbol	Name	Function Class
4921540A03Rik	RIKEN cDNA 4921540A03 gene	712 bp upstream
Cpgi18969	CpG island 18969	1281 bp distal
Cpgi18970	CpG island 18970	1604 bp proximal
Emc10	ER membrane protein complex subunit 10	1906 bp upstream
Garin5a	golgi associated RAB2 interactor 5A	within coordinates
Rr380742	regulatory region 380742	360 bp downstream
Rr646108	regulatory region 646108	1767 bp distal
Rr646109	regulatory region 646109	1501 bp distal
Rr646110	regulatory region 646110	1453 bp distal
Tssr66386	transcription start site region 66386	1848 bp downstream
Tssr66387	transcription start site region 66387	1835 bp downstream
Tssr66388	transcription start site region 66388	1758 bp downstream
Tssr66389	transcription start site region 66389	1731 bp downstream
Tssr66390	transcription start site region 66390	1725 bp downstream
Tssr66391	transcription start site region 66391	1182 bp downstream
Tssr72207	transcription start site region 72207	1983 bp upstream