rs214175166 SNP Detail

Summary

• ID
  rs214175166
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30813793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGGTTAC AACACGTATT
  TCATGCCCCA AGGCCCAAGC TGTTGCCTGT GTGTTCCATG ATCCCAAACA CCTCATGGAG
  GGAATATTAG TATCCATCCA TACTTGACTG CAAGGAAAGG TGGACTGAAG CCCAGAGACG
  TGAAGTTACC TACCCAGGAT CACACAGTAA AAGACAGCAG AAACAACCTG ACTAGCTCTA
  Y
  ACCCTTAACA GAGATGGCAA CAGCAGCAGC CCCCACCTCA GCCCCCAGAA GATGACATGT
  TGTTGGTTAG CTGAGAAATC CCTGAGACCT AAGGGGAAAC TGAGGCAAGG CACTAGTAAG
  GTCATATGGG GTAGCGGGGA GGTACAGCCA CACAGAAGGG CCAGTTAATA GTTAATCAGA
  TAGACGAGGA TTTTGAGCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322139432	CHEV_7_31899387	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214175166					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30813793 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18835	CpG island 18835	1567 bp proximal
Hpn	hepsin	within coordinates
Rr645021	regulatory region 645021	within coordinates
Rr645022	regulatory region 645022	904 bp proximal
Tssr71932	transcription start site region 71932	332 bp downstream
Tssr71933	transcription start site region 71933	859 bp downstream