rs214177222 SNP Detail

Summary

• ID
  rs214177222
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:3727586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTTTCCCTA CACTGGGCAG TTCTAGACCT
  GAGGCTTTCT GAAGGTACCT CTGGGGAAGT GTGTGGATGG TAGGTGGGGA GGAATTCAGG
  CCCTAAGTCA CCCACTCTGG TGAGAGGGAG GGAGAGAAAA GGTGTCTGGT GCCGACTTCC
  Y
  GAGGTTAGCC TTAGTTCCTT GAGGCAGCGA AGGCTGCAGT CACCCCTTCC CTGTGCAGCA
  CAGGAAGCTC AGAGAGCTTG CCCCAGAGCT GTTCATTAGA CTAGTTAACC GTGTTACCAG
  AGCGCTCCAG GATCAGATGG AGAACAGCAT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320205090	CHEV_2_3643821	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214177222					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3727586 () rs orientation: forward

Symbol	Name	Function Class
Fam107b	family with sequence similarity 107, member B	within coordinates
Rr367092	regulatory region 367092	1103 bp upstream
Rr396754	regulatory region 396754	274 bp upstream
Rr550942	regulatory region 550942	within coordinates
Tssr15911	transcription start site region 15911	625 bp upstream
Tssr22380	transcription start site region 22380	171 bp downstream
Tssr22381	transcription start site region 22381	238 bp downstream