rs214180732 SNP Detail

Summary

• ID
  rs214180732
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23942723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTCTGCTT CTTGCCACTC
  AACATCCCAG CAGAATTAGA ATTTTGCTCA AGTAATTCTG AGTTACCATA CTAGTCACAA
  TAAATAGTGC TGCCTTAAAA AACACAGTTC TCATTTCAAA TAGAATTAAG AGATGTTTTA
  CTTGAGAGCT AAATATGAAT GCTCATGGCC TAGGAACACA AATTCAGATT CTTCCAAGTA
  Y
  TGTAGTTTGC TTTGGGAGTG TTCCATGACA TTTTACTAGT TATACTTGAC TTTTTTTAAT
  ATTATTGTTT TAGATGGTTT GCCTACATGT ATTTCTGTGC CTCTTTTATG ATTGGTACTC
  AGAGACCAGC AGTGGGAACT GGGACTCCTG GGACTGCAGT TACAAGAGAT TTTGAGACAC
  CATGTGGGTG CGGGTGCGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324291481	CHEV_13_23850609	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214180732					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23942723 () rs orientation: forward

Symbol	Name	Function Class
4930558J22Rik	RIKEN cDNA 4930558J22 gene	1102 bp upstream
Cpgi5375	CpG island 5375	1243 bp distal
Cpgi5376	CpG island 5376	1939 bp proximal
H4c2	H4 clustered histone 2	1331 bp downstream
Rr388131	regulatory region 388131	882 bp downstream
Rr388132	regulatory region 388132	1056 bp upstream
Rr475943	regulatory region 475943	1717 bp distal
Rr475944	regulatory region 475944	612 bp distal
Tssr118864	transcription start site region 118864	1745 bp downstream
Tssr121748	transcription start site region 121748	1111 bp upstream