rs214182646 SNP Detail

Summary

• ID
  rs214182646
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:98308704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAAGGGA AGCTTGCTAC
  CCTTCCCTCA CTTGCCAAGG GTATTTATAG TGGCCTACTG TATACCCTGC ACTTCCCACC
  ACAGCTCAGG GAAGGGGCAA CTGGGAACTC CCTATTCAGC CAGTGACTAG AGGGAAGAAA
  ATTGCAGGAG TAGGTTTTTG AACCTTCTTG TGTTGAAGGC CACACCCCAC CCTACACTCA
  R
  CCAGGTTCCT CCGTGGACAG ACAGCCCTTT CAGAAGCAGT ATAGCTAAGT TCTCAAGGGC
  TGTAGCTGAA GAGGGTTAAG GGTCACCAGG AGGACCACTC ACTCTTACCT GCTTTATTCT
  TTGGGAAACC ATCAGACCAG AATCTGAGGC TGCTATTGGA ATGCTGGAAA AAGTAACCAG
  TTGGCAGTGT ACTCAGAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323129397	CHEV_9_98327070	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214182646					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:98308704 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22178	CpG island 22178	958 bp distal
Rbp1	retinol binding protein 1, cellular	within coordinates
Rr685258	regulatory region 685258	729 bp proximal
Rr685259	regulatory region 685259	1609 bp proximal
Tssr2984	transcription start site region 2984	1547 bp downstream
Tssr86646	transcription start site region 86646	1819 bp downstream
Tssr86647	transcription start site region 86647	1746 bp downstream
Tssr86648	transcription start site region 86648	1716 bp downstream
Tssr86649	transcription start site region 86649	1681 bp downstream
Tssr86650	transcription start site region 86650	1321 bp downstream
Tssr86651	transcription start site region 86651	1138 bp downstream