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rs214187245 SNP Detail
Summary
  • ID
    rs214187245
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr6:90405618 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCTGGTCCTG AACTGCGTTT
    GCGACGCCAA GGCAACTATT CTCACAGGAG CTGTGATGTC ATAAAGCCCC GGAGGCGGGC
    CCGGGCACAC TGGGCGGGCT GGCGGGCCGG CGGGCGCGGA GTACTGTGCA GGACTGTGGC
    AGCTAAAGAG CAGAAGACAC GGACTCAGGG AAGGGACAAC GACTAGAAGC AGAGCGATCC
    K
    GGTTGTTGCA ACCCTGCAAC CCGGGGACAG GGTACGTTTG CCCAGCGCAC TAGCTTCTTT
    CACCCCCAGA TTCTCCTGCC CATCCGTAAA GGATTTTGTT GCAGCTAGGG CACAGACAAC
    AGCCTGGCTC TTCAGAGAAT ATTTAGGAGT CTTGGGGCCG GGGAGGACGA CGGTAAAACA
    GTCTACAGGC TAGGAATGTG                                            
    
    K = G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss369164654 MGP_WTSI_6_90378630 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs214187245 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss369164654 MGP_WTSI_6_90378630 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:90405618 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cfap100 cilia and flagella associated protein 100 Intron
mRNA-UTR
Noncoding-Transcript-Variant
Cpgi17720 CpG island 17720 within coordinates
Gm53295 predicted gene, 53295 within coordinates
Gm67990 predicted gene, 67990 within coordinates
Rr634196 regulatory region 634196 252 bp distal
Rr634197 regulatory region 634197 77 bp distal
Rr634198 regulatory region 634198 within coordinates
Rr634199 regulatory region 634199 151 bp proximal
Rr634200 regulatory region 634200 243 bp proximal
Tssr57646 transcription start site region 57646 71 bp downstream
Tssr62021 transcription start site region 62021 181 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory

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