rs214202337 SNP Detail

Summary

• ID
  rs214202337
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:92422628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGAAGCAG CCACAGGAAA
  GTTGGCCAGT GATAAAAAGC TTGAACCAGG GCATCAAGAG GTATGTTACT TAAGCAGGAA
  AGAATGAATG GAAGAAGGCA GAGAAAATGT GAAGAAAAAT ATAACAGTCC TCTAGGTTGG
  TGCTAGTGAG AGCAGAGATT GACAAAAATC TGGAGCCATG TAAGTAAGAG GATCATTAAT
  R
  AAGATAAAGA AACTAGGTGT AAGATCTGGA TTTGATGAGC TAAAGAAGCT GAGTGTTTGC
  CATGGGAAGT AGATATTTGT GGAGTAGACA ACTCCAGCCT ACAGGAGGGC TGGAAACCCG
  AGAGGGCTGG AAGGATTTGG TTTCAGGTTG TTACTGAAGC GTCTGGCTAT TTTGAAAGTC
  TCAGAGACTA TTGCTTTATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323074140	CHEV_9_92435413	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214202337					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:92422628 () rs orientation: forward

Symbol	Name	Function Class
B430319G15Rik	RIKEN cDNA B430319G15 gene	within coordinates
Cpgi22147	CpG island 22147	1282 bp proximal
Gm37545	predicted gene, 37545	492 bp upstream
Plod2	procollagen lysine, 2-oxoglutarate 5-dioxygenase 2	1648 bp upstream
Rr684631	regulatory region 684631	1951 bp distal
Rr684632	regulatory region 684632	1158 bp proximal
Tssr86520	transcription start site region 86520	1680 bp upstream
Tssr86521	transcription start site region 86521	1855 bp upstream