rs214202622 SNP Detail

Summary

• ID
  rs214202622
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18914217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAACCCTA CTTCAAAAGA
  GGTTGCTTGG TATAGTGGGT GTGGCTTAAG ATTGGGCGTG GCTTAGGTGT GTGTGTCAGA
  TCTTACAGGA TAGCTTGGAA AACGTTGGGA CCCTGTCCAG TGAAATTGGA TAGAGTCAGA
  TTGCTTAATA CGACCCAAGA AAAGAGGTGG ATGTGACATT GTTTATTAAG AGGGAAGCCA
  R
  GAGTGACCAT GGCTCAAGCC TGTAACAACG GCGGCTGAGG CAAGAGGATG CCAGGAGTTT
  GAAGCCAGAC TGGGTTACAT GATTACACTT TAAGTTTCAG TCCAGCCTTG ATTACAGTGA
  AACCCTGTCT CAGATTTATA CATACATACA TACATGCATA CATACATACA TACGGTGCAT
  GGGGGTTCAC AGCTCTGATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370743491	MGP_WTSI_7_19765641	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214202622					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370743491	MGP_WTSI_7_19765641	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18914217 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18451	CpG island 18451	1998 bp distal
Cpgi18452	CpG island 18452	361 bp distal
Cpgi18453	CpG island 18453	784 bp proximal
Eml2	echinoderm microtubule associated protein like 2	within coordinates
Mir330	microRNA 330	1173 bp upstream
Rr155272	regulatory region 155272	1417 bp distal
Rr167138	regulatory region 167138	216 bp distal
Rr167139	regulatory region 167139	583 bp proximal
Tssr64796	transcription start site region 64796	1255 bp downstream
Tssr64797	transcription start site region 64797	870 bp upstream
Tssr64798	transcription start site region 64798	919 bp upstream
Tssr64799	transcription start site region 64799	1001 bp upstream
Tssr64800	transcription start site region 64800	1115 bp upstream