rs214225711 SNP Detail

Summary

• ID
  rs214225711
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34759105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTACCAAAT GAGTTCCAAG
  ACAGCTAGCA CTACACAGAG AAACCTTGTC TTGAAAAATC AAAACTGGGT TGGGGATTTA
  GCTCAGTGGT AGAGCACTTG CCTAGCAAGT GCAAGGCCCT GGGTTCCGTC CTCTGCTCTG
  GAAAAAAAAA AGAAATGAGA AGAGAAAAGG AAAGACAGAC AGACAGACAG ACCAAAATGC
  Y
  GGGTGTGGTG GCACACACAA TCCCAGCACT CAGGAGGCAG AGGCAGGCGG ATTTCTGAGT
  TCGAGGCCAG CCTGGTCTAC AAAGTGAGCT CCAGGACAGC CAGGGCTGTA CAGAGAAACC
  CTGTCTCAAA AAACCAAATA AATAAATAAA TAAATAAAAT ATTTATTTCG AGATAGTATT
  ATAGTCAAGG CTGGCTTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400243406	MGP_WTSI_18_34785706	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214225711					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400243406	MGP_WTSI_18_34785706	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34759105 () rs orientation: forward

Symbol	Name	Function Class
Brd8	bromodomain containing 8	1451 bp upstream
Cpgi9821	CpG island 9821	830 bp distal
Kif20a	kinesin family member 20A	within coordinates
Rr352687	regulatory region 352687	within coordinates
Rr370355	regulatory region 370355	1773 bp downstream
Rr370356	regulatory region 370356	1358 bp downstream
Rr405583	regulatory region 405583	1025 bp downstream
Tssr5275	transcription start site region 5275	1450 bp upstream
Tssr150465	transcription start site region 150465	1423 bp downstream
Tssr150466	transcription start site region 150466	1390 bp downstream
Tssr150467	transcription start site region 150467	1052 bp downstream
Tssr150468	transcription start site region 150468	1021 bp downstream
Tssr150469	transcription start site region 150469	999 bp downstream
Tssr152814	transcription start site region 152814	1461 bp upstream
Tssr152815	transcription start site region 152815	1237 bp upstream
Tssr152816	transcription start site region 152816	1208 bp upstream