rs214235049 SNP Detail

Summary

• ID
  rs214235049
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:149761831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTGA GTTATACCCC CAGCCCCACG
  S
  TTTTTTTTTT TTTTAATTTT TGTGT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321426418	CHEV_4_149051483	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214235049					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149761831 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15330	CpG island 15330			969 bp distal
Pik3cd	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta			Intron
				Noncoding-Transcript-Variant
Rr605004	regulatory region 605004			1341 bp distal
Rr605005	regulatory region 605005			840 bp distal
Rr605006	regulatory region 605006			1823 bp proximal
Tssr44666	transcription start site region 44666			1309 bp upstream
Tssr44667	transcription start site region 44667			1250 bp upstream