rs214235562 SNP Detail

Summary

• ID
  rs214235562
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:73100505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAGCTCCT GGGTCCCCCC
  TGCTGGGCTT TCTGGCTTGG TCCTGCAGCC TGGTAACCCG CCCCCTTCCA CCGCGTTGTC
  TTTCTTTACG CCCCCCCCCC CCTTAGATTT TTATCTCAGT CACCTAGGAC GCAGAGCTTC
  CTTCCTAGCT GATCAGCTCA TCCCTCTCTT TTCTCCTTTT CCGCCATCAT TTTCCTCCTT
  K
  TCTTTTGTCA CCTTAAAGTT TTCTTTTAAA GGCATTCTGA GCAAAAATAG TCTAGGGAAA
  GGCGACGTCC ACATAAGCTC TCCCCATTCA CGAAGAGCCG GTGCGTGCAG GCCTGGTCTT
  CCACCTTAAG GTGAGAGAGA AGTCTTGCGG TGGACTTACT TTTGGGCCTA GAGATCTTGC
  AAATGAACTC AACCTGGAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320344746	CHEV_2_73108218	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214235562					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:73100505 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11766	CpG island 11766	420 bp proximal
Cpgi11767	CpG island 11767	1139 bp proximal
Gm75377	predicted gene, 75377	1569 bp upstream
Rr406543	regulatory region 406543	665 bp distal
Rr559114	regulatory region 559114	1625 bp distal
Rr559115	regulatory region 559115	1124 bp distal
Rr559116	regulatory region 559116	within coordinates
Rr559117	regulatory region 559117	522 bp proximal
Rr559118	regulatory region 559118	1274 bp proximal
Sp9	trans-acting transcription factor 9	Intron
Tssr18369	transcription start site region 18369	1765 bp upstream
Tssr18370	transcription start site region 18370	1786 bp upstream