rs214242184 SNP Detail

Summary

• ID
  rs214242184
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29893650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGTAGTGGC CTTGCCAGGA GCCCAGCCCT TCCCGCAAAA
  AAAAAAAAAA AAAAAAAAAA AAAAGCAAGC ATTTCCGGCA ACTAGATTGG GGAGGAAACT
  R
  AGGCCTCGAG ATGGGGACAG AGCCTCTAGC TAGGGGTCTG GACAGGTGAT AGGAGATGTG
  AAACCTCCTA GGGTCTAGAA AGTACCCTGG CCCAGGCTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322132190	CHEV_7_30979244	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214242184					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29893650 () rs orientation: forward

Symbol	Name	Function Class
Capns1	calpain, small subunit 1	within coordinates
Cpgi18781	CpG island 18781	1196 bp distal
Cpgi18782	CpG island 18782	184 bp distal
Cpgi18783	CpG island 18783	254 bp proximal
Gm26810	predicted gene, 26810	within coordinates
Rr400232	regulatory region 400232	320 bp downstream
Rr400233	regulatory region 400233	810 bp upstream
Tssr65662	transcription start site region 65662	268 bp downstream
Tssr71696	transcription start site region 71696	1295 bp upstream
Tssr71697	transcription start site region 71697	1274 bp upstream
Tssr71698	transcription start site region 71698	1243 bp upstream
Tssr71699	transcription start site region 71699	1117 bp upstream
Tssr71700	transcription start site region 71700	1082 bp upstream
Tssr71701	transcription start site region 71701	858 bp upstream
Tssr71702	transcription start site region 71702	406 bp upstream
Tssr71703	transcription start site region 71703	192 bp upstream
Tssr71704	transcription start site region 71704	85 bp upstream
Tssr71705	transcription start site region 71705	63 bp upstream
Tssr71706	transcription start site region 71706	795 bp downstream
Tssr71707	transcription start site region 71707	807 bp downstream
Tssr71708	transcription start site region 71708	821 bp downstream
Tssr71709	transcription start site region 71709	996 bp downstream
Tssr71710	transcription start site region 71710	1338 bp downstream