rs214243544 SNP Detail

Summary

• ID
  rs214243544
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:72198156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGGTGGG CATCTCATAA
  AAAACAATGG GGATCCTGTT GGCTTTGGTG TGAGGAAGGA CTGTTCCCTC CACTGTTTGA
  GAAAGAGGAC ATGAGATGAA AGGAAGTACT GCGTAGAAAT ATGTTTTTCC TATATTCTGT
  CTTTGCCTGG AACAGAAAAG ACTGAACACT TTTAAGGAGT AACCATGAAA TATATCTTAA
  M
  GTATAGTTTC TCATTCAAAT CAATAGAATT ATCTACATCT GATGCACCCA GTAGATAGAG
  TACATTAACT CATATCATAC ATTTATCAGA GTAAATTTGG CATTTTATTC TTCTGAGAAG
  AAAAAATGTT TTGTAAGTAT TGCACATCTA TTAGAGGATC GCAATGCCTT TGCTCATCAG
  TGGACCAGCT GCACACCACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320342107	CHEV_2_72205869	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214243544					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72198156 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Map3k20	mitogen-activated protein kinase kinase kinase 20			Intron
				Noncoding-Transcript-Variant
Rr558961	regulatory region 558961			1444 bp distal
Rr558962	regulatory region 558962			937 bp distal
Rr558963	regulatory region 558963			1278 bp proximal