rs214247462 SNP Detail

Summary

• ID
  rs214247462
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:141464628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGGTGGCG GCTGCTGCTG
  CTGCTGCGGC CGCCTGGGGA GCCCAGCCGA GTGCCGCCTG GGGCTGCGGG GAGTGAGGGG
  AGACGGAGAG TTCGGTGGAG CCCGGGCAGC GGAGCCGAGC AGCGGGTGAG TGGAGCCCCA
  GGGGGACTCG GCGGCCAGTC CTCGGGGGGC CGGACGAGGA GGAGCGGGAA GATGGAGCGG
  W
  GGCGGCGGGG CGGAGGGTGG CGGCCCCATG GCCCGGCCCC TGGCTGGCCC CGCGTCCCCG
  CCCTCCCTCT CGGCTTCCTC CCGCCGCCCG CCTGCGCCTG GGGGGCTGGT CCGGAGCAGG
  CGGAGGGCTG AGGGTGGCGC TGGCCCGGAG GGCGGGCGTG AGGGGCCAGG GGGGGTGGAG
  CTGGGGGTTC GGGGGTGTAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss404780373	MGP_WTSI_X_139116175	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214247462					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404780373	MGP_WTSI_X_139116175	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:141464628 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22978	CpG island 22978	within coordinates
Rr694098	regulatory region 694098	1451 bp distal
Rr694099	regulatory region 694099	1093 bp distal
Rr694100	regulatory region 694100	within coordinates
Tmem164	transmembrane protein 164	within coordinates
Tssr162238	transcription start site region 162238	791 bp downstream
Tssr162239	transcription start site region 162239	193 bp downstream
Tssr162240	transcription start site region 162240	219 bp upstream
Tssr162241	transcription start site region 162241	251 bp upstream