rs214249942 SNP Detail

Summary

• ID
  rs214249942
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:28421895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACTGGAAC AGCACCGCTT
  CCGGGTCTCC TGGAAGTGAC GGCAGCAAAA CGCCACAGAC CCCGCCCCGC CGTGGGCGTG
  AGATGGGTGG GGCTTCCGCA CCGTGTCTGC TGGTGGCCTG GAGAGGGAGT AACCCGTAGG
  TAAGTCTAGA GCAAGCACCT GAGCAGTGGT TTGGAGATGC CTAACTTTGC CCTCAAGCTA
  Y
  CACCAGTGAG CGACAGGGGG CGACGTCGCA CTGCATTTGC CCCAAAAACA TAGATGAAAG
  ACGCATCAAA CTATTTGGGG CAATGTCCAA CATTTGGGGC AACAGTTAGG ACTCATACTA
  GGAAAACGAG GCCGGTACCT GGTTAACGTA AAGCATAATA GCTCCCTCCC TTAGTTCTGA
  TTAGTAAAAG GGGCATTATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367792735	MGP_WTSI_6_28371896	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214249942					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367792735	MGP_WTSI_6_28371896	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:28421895 () rs orientation: forward

Symbol	Name	Function Class
Arf5	ARF GTPase 5	1708 bp upstream
Cpgi17215	CpG island 17215	within coordinates
Cpgi17216	CpG island 17216	1334 bp proximal
Gcc1	golgi coiled coil 1	within coordinates
Rr399587	regulatory region 399587	within coordinates
Rr627380	regulatory region 627380	within coordinates
Rr627381	regulatory region 627381	6 bp proximal
Rr627382	regulatory region 627382	1174 bp proximal
Tssr55188	transcription start site region 55188	90 bp downstream
Tssr55189	transcription start site region 55189	1638 bp upstream
Tssr55190	transcription start site region 55190	1643 bp upstream
Tssr60058	transcription start site region 60058	354 bp upstream
Tssr60059	transcription start site region 60059	304 bp upstream
Tssr60060	transcription start site region 60060	155 bp upstream