rs214253662 SNP Detail

Summary

• ID
  rs214253662
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:87472649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCGGAGAG CGCGCCGCGG
  ACCCCGGCCC CGTCTAACGC GCCCGGTCGC CAGCTGCCGC CGCCGCCACC GCCACCGCCA
  CCGTCACCGC CGCCACCGCG GGCCGCGCCT CCACCTCTCC CGGCACCGAG ACCGACGGGA
  CACCCTGGGC CGCCGCCCTC GAGAGCGCGC CCGCCCGGCA GCCCGGCTTC CCTGCCGCCG
  Y
  CGCCGCCGCC CCGCGCGCTC TCGAGCTCGC CGCGCGCGCC CGCTAAGTAC CACACACTGC
  GGCGGCCGCC ATGAGCGGGA GCGCGCACCG AACCCGGCTG GGCGGGGCTT CCCACGGCCA
  CGCACGCGCA GAAGCGGCTG GCGGCTGCTG CCCGCACTCG GTGGCGGTTG GCGTCGAGAC
  GCTTCGGTTA CCGGAGCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375448169	MGP_WTSI_8_89269920	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214253662					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375448169	MGP_WTSI_8_89269920	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:87472649 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20765	CpG island 20765	within coordinates
Gm10638	predicted gene 10638	within coordinates
Gm63869	predicted gene, 63869	602 bp upstream
Rr666882	regulatory region 666882	613 bp distal
Rr666883	regulatory region 666883	558 bp distal
Rr666884	regulatory region 666884	98 bp distal
Rr666885	regulatory region 666885	within coordinates
Siah1a	siah E3 ubiquitin protein ligase 1A	87 bp upstream
Tssr78572	transcription start site region 78572	549 bp downstream
Tssr78573	transcription start site region 78573	506 bp downstream
Tssr78574	transcription start site region 78574	467 bp downstream
Tssr78575	transcription start site region 78575	420 bp downstream
Tssr78576	transcription start site region 78576	389 bp downstream
Tssr78577	transcription start site region 78577	361 bp downstream
Tssr78578	transcription start site region 78578	337 bp downstream
Tssr82293	transcription start site region 82293	within coordinates
Tssr82294	transcription start site region 82294	72 bp downstream