rs214264456 SNP Detail

Summary

• ID
  rs214264456
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:155119844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCAGTGGA TTAGGCAGAG
  ATGTGACACC CACTCCCCCC CCCAGGTAGG GGCCACCAGC CAGCCTACCA CATCCTGGGT
  AGGTCCTGGG CCAGTCATGT TCGGGTTGCT CTTTTGGGTG CTGGCTGGGT TGGGAGTGGG
  TGGGGAGCAG CATCCCTGCT CTGTGGGGTT TGTCATTTTG TTAGGCCCTT GCCTGTCTGC
  Y
  CATCTTGCCC CTCATCCACC TGAGGCTTTG CCTCCTGCCA GGACCTGCCC CACCCCTGAA
  AGGCTGGCTC CCCTTGTCCT GACTCGGTGT ATGGATCTGT GGTCATTTCC TCTGCAGAAA
  GAATAAAGAC TGCTCAGGCC TGCCTGGCCC TTTGCCTCCA GCTGCTTGTT TGGGAGCAGG
  GAGGGCTGCT AGGTGACTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356211923	MGP_WTSI_2_155103660	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214264456					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356211923	MGP_WTSI_2_155103660	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:155119844 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12515	CpG island 12515	470 bp distal
Gm75512	predicted gene, 75512	1655 bp upstream
Map1lc3a	microtubule-associated protein 1 light chain 3 alpha	within coordinates
Pigu	phosphatidylinositol glycan anchor biosynthesis, class U	319 bp downstream
Tssr21073	transcription start site region 21073	1574 bp downstream
Tssr21074	transcription start site region 21074	1450 bp downstream
Tssr21075	transcription start site region 21075	1430 bp downstream
Tssr21076	transcription start site region 21076	1371 bp downstream
Tssr21077	transcription start site region 21077	1332 bp downstream
Tssr21078	transcription start site region 21078	1310 bp downstream
Tssr21079	transcription start site region 21079	1304 bp downstream
Tssr21080	transcription start site region 21080	1152 bp downstream
Tssr21081	transcription start site region 21081	1009 bp downstream
Tssr21082	transcription start site region 21082	994 bp downstream
Tssr21083	transcription start site region 21083	969 bp downstream
Tssr21084	transcription start site region 21084	943 bp downstream
Tssr21085	transcription start site region 21085	818 bp downstream