rs214271319 SNP Detail

Summary

• ID
  rs214271319
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:77351817 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCATTCGG GCAAAATACA
  AATGCACATT AAAAAAATAA ACACTTAAAA GCTACAAAAC CCAAATGCAG TACAGTTCAG
  CCCAAATACG GTATTATCTG GGGGAGCTCT GTTAGTTGCC CAATTGTCAA ACAAAATTTC
  TGATGTTTTC AAAGAAAACG CCAACCTACT TCTCTCTGAG TCGGCCAAGT GAGTGGCGCA
  Y
  TGCTATTCTC CAGTGGGGAT ACATGATGTG AAGGTATGGT CACCTCACAA AATATTCTAG
  GAGTCCTTGG AATATTGACC AACTAAATAT GTTCAGTCTT GGCTTTGTAG CCAAAGCAAA
  TGAACCAAAT TAGTCTCAGT TGCCAGGTCT TGTTCAGGAA ATGAGTTTGA GAAACAAAAT
  TCCTGTTAGC CTCATGGATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323755229	CHEV_11_77274493	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214271319					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:77351817 () rs orientation: forward

Symbol	Name	Function Class
Coro6	coronin 6	1420 bp upstream
Cpgi3305	CpG island 3305	1039 bp proximal
Rr247229	regulatory region 247229	783 bp proximal
Ssh2	slingshot protein phosphatase 2	771 bp downstream
Tssr103136	transcription start site region 103136	1334 bp upstream
Tssr103137	transcription start site region 103137	1435 bp upstream
Tssr103138	transcription start site region 103138	1567 bp upstream
Tssr103139	transcription start site region 103139	1576 bp upstream
Tssr103140	transcription start site region 103140	1614 bp upstream