TGTGCTGCAG GTTGTCCTGG GCTTCCCCAA GCCATTCTCA TTCCCAGCTC ACCCTCAAAT CCTACTGTTT TGACAGCGAG AATGGAGCGA TCACGTGACC ACGTCCGACT TTTTGACAGT GAGACCGGGG AGATCACGTG ATCACGTCCC TCCTCCCATA CCCCAGGATA GCAGCGCCAG CCTCTAGGGA CAGCAGAAGC G GCAGAAGCGG GTGCTTTTTC AAGGAACTTC CGACTACTCT GTTTATCAGG TCTTCCAACT TGGCCTTTAC CATATCTGCC TACGACACGC ATTGCTTGGC CCACGCAGAT TTTTTTTTTT TTTTTTTCAG ATTCAGTAGA TGTGGGTGTG TGCCCAAGGA CTCGATCACA CGCTGGAACT GCTTGTATGG GAAGAGCCCT G = G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss349341442 | MGP_WTSI_1_40142809 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G |
SNP Consensus Information | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
rs214289537 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss349341442 | MGP_WTSI_1_40142809 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | A/C/G |
Location: Chr1:40125124 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi194 | CpG island 194 | within coordinates | ||||||
Gm16894 | predicted gene, 16894 | 113 bp upstream | ||||||
Il1r2 | interleukin 1 receptor, type II | within coordinates | ||||||
Rr26842 | regulatory region 26842 | 1443 bp proximal | ||||||
Rr29353 | regulatory region 29353 | within coordinates | ||||||
Rr396010 | regulatory region 396010 | within coordinates | ||||||
Tssr62 | transcription start site region 62 | 1247 bp downstream | ||||||
Tssr6411 | transcription start site region 6411 | 1215 bp downstream | ||||||
Tssr6412 | transcription start site region 6412 | 1194 bp downstream | ||||||
Tssr6413 | transcription start site region 6413 | 1180 bp downstream | ||||||
Tssr6414 | transcription start site region 6414 | 736 bp downstream | ||||||
Tssr6415 | transcription start site region 6415 | 127 bp upstream | ||||||
Tssr11414 | transcription start site region 11414 | 102 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/10/2024 MGI 6.24 |
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