rs214290006 SNP Detail

Summary

• ID
  rs214290006
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:35726763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAGGTAGA GCGGGCTGGC
  CTAAAACTCA AGCATTTCCT GTGTTCTGGG ATTACATCTG CTGCCTCTCC GGGCCTATAG
  TTTTCTATAT TGTCACCAGT GGTACCTATA CCCACTTTGA GAAAATGCTG CATTAAGGCA
  CTTGGCTATC ACCACAGCAC ATAAAAAAAT GTTAAAAACA CACACACACA CACACACACA
  M
  CACTGTGATT GCTGTGAATT CATTCCAGCC TGAGTTAGTG AGTTTTAGGA CTGTAGAGTA
  AGGACCTGTC TCCAGGTAAG CAAGCAAACA AGCAAAAAAA AAAAAAAAAA AAAAAAAAAA
  AAAGGAAGAA GGAAGGAAAA AAAAGAGGTC ACAAGCCACT GAGAAACGCC TATGTTCCCA
  TTGCTACACA GCCGGATTGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382990287	MGP_WTSI_11_35649438	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	C	C	A	C	A	A	A	A	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs214290006					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	C	C	A	C	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382990287	MGP_WTSI_11_35649438	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:35726763 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2730	CpG island 2730	1192 bp distal
Rars1	arginyl-tRNA synthetase 1	1430 bp upstream
Rr402482	regulatory region 402482	1265 bp downstream
Rr445142	regulatory region 445142	1441 bp distal
Rr445143	regulatory region 445143	1692 bp distal
Rr445144	regulatory region 445144	964 bp distal
Rr445145	regulatory region 445145	1317 bp distal
Rr445146	regulatory region 445146	1388 bp proximal
Tssr3462	transcription start site region 3462	1554 bp upstream
Tssr3463	transcription start site region 3463	1460 bp upstream
Tssr107408	transcription start site region 107408	1427 bp upstream
Tssr107409	transcription start site region 107409	1406 bp upstream
Tssr107410	transcription start site region 107410	91 bp downstream