rs214291078 SNP Detail

Summary

• ID
  rs214291078
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:96358795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGTGTATG TGTACTTGGT
  CTATGTATAC ATGTTCACAT GTGTGTGAGT GCATATGTAT GTGTGCCCAT GGAGGCTCTC
  TTCTGCCAGC CAGTATCCAG GCTGTTTCCA GAGGCAGAGT TTGTCACTGG ACCTGGAGCT
  TGCGGATCCC ACTGTCTCCA GTGAAGCCCC TGGAGGTGGG AGGTGTTGCA CTGTGTTTAC
  S
  CAGCTTTTAT GTGGCTGCCA GGAATCTGAA TTTCACCCCT CATGCTTGCA CAGTAAGAGC
  TCCGTCACCT CTCATATGAA ATTGATCTTT ACTTTTAAAA TGCAATCAAC TCCCCCTCTT
  CTTTGACCTT GCAGCCCTTC TCCTTCCTCT ATTTATTGTG TCTTGTCTCC CCACTGGCCA
  GGAACATAAG CTTCATAACC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321616900	CHEV_5_96639955	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs214291078					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:96358795 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16074	CpG island 16074	525 bp distal
Gm72185	predicted gene, 72185	868 bp upstream
Mrpl1	mitochondrial ribosomal protein L1	within coordinates
Rr367885	regulatory region 367885	684 bp downstream
Rr614893	regulatory region 614893	1433 bp distal
Rr614894	regulatory region 614894	895 bp distal
Rr614895	regulatory region 614895	782 bp distal
Rr614896	regulatory region 614896	within coordinates
Tssr47395	transcription start site region 47395	1448 bp downstream
Tssr47396	transcription start site region 47396	1173 bp downstream
Tssr47397	transcription start site region 47397	775 bp downstream
Tssr51962	transcription start site region 51962	910 bp upstream